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        <a href="octant-module.html">Package&nbsp;octant</a> ::
        Module&nbsp;roms
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<h1 class="epydoc">Source Code for <a href="octant.roms-module.html">Module octant.roms</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-comment"># encoding: utf-8</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-docstring">"Tools specific for the Regional Ocean Modeling System"</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-name">__docformat__</tt> <tt class="py-op">=</tt> <tt class="py-string">"restructuredtext en"</tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">datetime</tt> <tt class="py-keyword">import</tt> <tt class="py-name">datetime</tt> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> <tt class="py-keyword">as</tt> <tt class="py-name">np</tt> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">netCDF4</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"><tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">netCDF3</tt> <tt class="py-keyword">as</tt> <tt class="py-name">netCDF4</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line"> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package octant=octant-module.html"><a title="octant" class="py-name" href="#" onclick="return doclink('link-0', 'octant', 'link-0');">octant</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module octant.io=octant.io-module.html"><a title="octant.io" class="py-name" href="#" onclick="return doclink('link-1', 'io', 'link-1');">io</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Function octant.io.Dataset()=octant.io-module.html#Dataset"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-2', 'Dataset', 'link-2');">Dataset</a></tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name"><a title="octant" class="py-name" href="#" onclick="return doclink('link-3', 'octant', 'link-0');">octant</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Module octant.depths=octant.depths-module.html,Module octant.ocean.depths=octant.ocean.depths-module.html"><a title="octant.depths
octant.ocean.depths" class="py-name" href="#" onclick="return doclink('link-4', 'depths', 'link-4');">depths</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Class octant.depths.s_coordinate=octant.depths.s_coordinate-class.html"><a title="octant.depths.s_coordinate" class="py-name" href="#" onclick="return doclink('link-5', 's_coordinate', 'link-5');">s_coordinate</a></tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line"> </tt>
<a name="nc_gls_dissipation"></a><div id="nc_gls_dissipation-def"><a name="L16"></a><tt class="py-lineno"> 16</tt> <a class="py-toggle" href="#" id="nc_gls_dissipation-toggle" onclick="return toggle('nc_gls_dissipation');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#nc_gls_dissipation">nc_gls_dissipation</a><tt class="py-op">(</tt><tt class="py-param">nc</tt><tt class="py-op">,</tt> <tt class="py-param">tidx</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_gls_dissipation-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_gls_dissipation-expanded"><a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line">    <tt class="py-docstring">'''Return the dissipation, based on tke, gls and the gls scheme parameters </tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"><tt class="py-docstring">       cmu0, m, n, and p.  Usage:</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line"><tt class="py-docstring">       </tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"><tt class="py-docstring">       eps = nc_gls_dissipation(nc, tidx)</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line"><tt class="py-docstring">       </tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line"><tt class="py-docstring">       where nc is a netcdf object or filename, tidx is the time index to return</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt>  <tt class="py-line"><tt class="py-docstring">    '''</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line">    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-6" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-6', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt>  <tt class="py-line">    <tt class="py-name">cmu0</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'gls_cmu0'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line">    <tt class="py-name">gls_m</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'gls_m'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt>  <tt class="py-line">    <tt class="py-name">gls_n</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'gls_n'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line">    <tt class="py-name">gls_p</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'gls_p'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line">     </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line">    <tt class="py-name">tke</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'tke'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line">    <tt class="py-name">gls</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'gls'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line">     </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">cmu0</tt><tt class="py-op">**</tt><tt class="py-op">(</tt><tt class="py-number">3.0</tt><tt class="py-op">+</tt><tt class="py-name">gls_p</tt><tt class="py-op">/</tt><tt class="py-name">gls_n</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">tke</tt><tt class="py-op">**</tt><tt class="py-op">(</tt><tt class="py-number">3.0</tt><tt class="py-op">/</tt><tt class="py-number">2.0</tt><tt class="py-op">+</tt><tt class="py-name">gls_m</tt><tt class="py-op">/</tt><tt class="py-name">gls_n</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">gls</tt><tt class="py-op">**</tt><tt class="py-op">(</tt><tt class="py-op">-</tt><tt class="py-number">1.0</tt><tt class="py-op">/</tt><tt class="py-name">gls_n</tt><tt class="py-op">)</tt> </tt>
</div><a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt>  <tt class="py-line"> </tt>
<a name="nc_N2"></a><div id="nc_N2-def"><a name="L36"></a><tt class="py-lineno"> 36</tt> <a class="py-toggle" href="#" id="nc_N2-toggle" onclick="return toggle('nc_N2');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.roms.nc_N2-class.html">nc_N2</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_N2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_N2-expanded"><a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line">    <tt class="py-docstring">'''Return N2 (buoyancy frequency squared).  Usage:</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line"><tt class="py-docstring">       </tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt>  <tt class="py-line"><tt class="py-docstring">       N2 = nc_N2(nc, tidx)</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line"><tt class="py-docstring">       </tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line"><tt class="py-docstring">       where nc is a netcdf object or filename, tidx is the time index to return</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line"><tt class="py-docstring">    '''</tt> </tt>
<a name="nc_N2.__init__"></a><div id="nc_N2.__init__-def"><a name="L43"></a><tt class="py-lineno"> 43</tt> <a class="py-toggle" href="#" id="nc_N2.__init__-toggle" onclick="return toggle('nc_N2.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms.nc_N2-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nc</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_N2.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="nc_N2.__init__-expanded"><a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-7" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-7', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-string">'rho'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rho</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'rho'</tt><tt class="py-op">]</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"Variable 'rho' not in netcdf file."</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">zr</tt> <tt class="py-op">=</tt> <tt id="link-8" class="py-name" targets="Class octant.roms.nc_depths=octant.roms.nc_depths-class.html"><a title="octant.roms.nc_depths" class="py-name" href="#" onclick="return doclink('link-8', 'nc_depths', 'link-8');">nc_depths</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">,</tt> <tt id="link-9" class="py-name" targets="Module octant.grid=octant.grid-module.html"><a title="octant.grid" class="py-name" href="#" onclick="return doclink('link-9', 'grid', 'link-9');">grid</a></tt><tt class="py-op">=</tt><tt class="py-string">'rho'</tt><tt class="py-op">)</tt> </tt>
</div><a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">     </tt>
<a name="nc_N2.__getitem__"></a><div id="nc_N2.__getitem__-def"><a name="L51"></a><tt class="py-lineno"> 51</tt> <a class="py-toggle" href="#" id="nc_N2.__getitem__-toggle" onclick="return toggle('nc_N2.__getitem__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms.nc_N2-class.html#__getitem__">__getitem__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">elem</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_N2.__getitem__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="nc_N2.__getitem__-expanded"><a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt id="link-10" class="py-name" targets="Function octant.tools.N2()=octant.tools-module.html#N2"><a title="octant.tools.N2" class="py-name" href="#" onclick="return doclink('link-10', 'N2', 'link-10');">N2</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rho</tt><tt class="py-op">[</tt><tt class="py-name">elem</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">zr</tt><tt class="py-op">[</tt><tt class="py-name">elem</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line"> </tt>
<a name="nc_curl"></a><div id="nc_curl-def"><a name="L54"></a><tt class="py-lineno"> 54</tt> <a class="py-toggle" href="#" id="nc_curl-toggle" onclick="return toggle('nc_curl');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#nc_curl">nc_curl</a><tt class="py-op">(</tt><tt class="py-param">nc</tt><tt class="py-op">,</tt> <tt class="py-param">tidx</tt><tt class="py-op">,</tt> <tt class="py-param">grd</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_curl-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_curl-expanded"><a name="L55"></a><tt class="py-lineno"> 55</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">grd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line">        <tt class="py-name">grd</tt> <tt class="py-op">=</tt> <tt id="link-11" class="py-name" targets="Function octant.roms.nc_grid()=octant.roms-module.html#nc_grid"><a title="octant.roms.nc_grid" class="py-name" href="#" onclick="return doclink('link-11', 'nc_grid', 'link-11');">nc_grid</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line">    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-12', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt>  <tt class="py-line">    <tt class="py-name">u</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'u'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line">    <tt class="py-name">v</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'v'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-op">(</tt> <tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> \ </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line">             <tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line"> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line"> </tt>
<a name="nc_div"></a><div id="nc_div-def"><a name="L64"></a><tt class="py-lineno"> 64</tt> <a class="py-toggle" href="#" id="nc_div-toggle" onclick="return toggle('nc_div');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#nc_div">nc_div</a><tt class="py-op">(</tt><tt class="py-param">nc</tt><tt class="py-op">,</tt> <tt class="py-param">tidx</tt><tt class="py-op">,</tt> <tt class="py-param">grd</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_div-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_div-expanded"><a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">grd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">        <tt class="py-name">grd</tt> <tt class="py-op">=</tt> <tt id="link-13" class="py-name"><a title="octant.roms.nc_grid" class="py-name" href="#" onclick="return doclink('link-13', 'nc_grid', 'link-11');">nc_grid</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line">    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-14', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line">    <tt class="py-name">u</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'u'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line">    <tt class="py-name">v</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'v'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-op">(</tt> <tt class="py-op">(</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">             <tt class="py-op">(</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L72"></a><tt class="py-lineno"> 72</tt>  <tt class="py-line"> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line"> </tt>
<a name="nc_pstrain"></a><div id="nc_pstrain-def"><a name="L74"></a><tt class="py-lineno"> 74</tt> <a class="py-toggle" href="#" id="nc_pstrain-toggle" onclick="return toggle('nc_pstrain');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#nc_pstrain">nc_pstrain</a><tt class="py-op">(</tt><tt class="py-param">nc</tt><tt class="py-op">,</tt> <tt class="py-param">tidx</tt><tt class="py-op">,</tt> <tt class="py-param">grd</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_pstrain-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_pstrain-expanded"><a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">grd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line">        <tt class="py-name">grd</tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="octant.roms.nc_grid" class="py-name" href="#" onclick="return doclink('link-15', 'nc_grid', 'link-11');">nc_grid</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line">    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-16', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line">    <tt class="py-name">u</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'u'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line">    <tt class="py-name">v</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'v'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tidx</tt><tt class="py-op">]</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line">    <tt class="py-name">ex</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt>  <tt class="py-line">    <tt class="py-name">ey</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">.</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line">    <tt class="py-name">gamma</tt> <tt class="py-op">=</tt> <tt id="link-17" class="py-name" targets="Function octant.tools.shrink()=octant.tools-module.html#shrink"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-17', 'shrink', 'link-17');">shrink</a></tt> <tt class="py-op">(</tt> <tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_u</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line">                     <tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">/</tt><tt class="py-name">diff</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_v</tt><tt class="py-op">,</tt> <tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt>  <tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-op">(</tt><tt class="py-name">ex</tt> <tt class="py-op">+</tt> <tt class="py-name">ey</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-18" class="py-name" targets="Variable octant.ocean.depths.sqrt=octant.ocean.depths-module.html#sqrt,Variable octant.ocean.sqrt=octant.ocean-module.html#sqrt,Variable octant.ocean.state.sqrt=octant.ocean.state-module.html#sqrt,Variable octant.ocean.step3d_t.sqrt=octant.ocean.step3d_t-module.html#sqrt,Variable octant.ocean.time.sqrt=octant.ocean.time-module.html#sqrt,Variable octant.ocean.velocity.sqrt=octant.ocean.velocity-module.html#sqrt"><a title="octant.ocean.depths.sqrt
octant.ocean.sqrt
octant.ocean.state.sqrt
octant.ocean.step3d_t.sqrt
octant.ocean.time.sqrt
octant.ocean.velocity.sqrt" class="py-name" href="#" onclick="return doclink('link-18', 'sqrt', 'link-18');">sqrt</a></tt><tt class="py-op">(</tt> <tt class="py-op">(</tt><tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-op">(</tt><tt class="py-name">ex</tt> <tt class="py-op">-</tt> <tt class="py-name">ey</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">**</tt><tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-name">gamma</tt><tt class="py-op">)</tt><tt class="py-op">**</tt><tt class="py-number">2</tt> <tt class="py-op">)</tt><tt class="py-op">,</tt> \ </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line">           <tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-op">(</tt><tt class="py-name">ex</tt> <tt class="py-op">+</tt> <tt class="py-name">ey</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt id="link-19" class="py-name"><a title="octant.ocean.depths.sqrt
octant.ocean.sqrt
octant.ocean.state.sqrt
octant.ocean.step3d_t.sqrt
octant.ocean.time.sqrt
octant.ocean.velocity.sqrt" class="py-name" href="#" onclick="return doclink('link-19', 'sqrt', 'link-18');">sqrt</a></tt><tt class="py-op">(</tt> <tt class="py-op">(</tt><tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-op">(</tt><tt class="py-name">ex</tt> <tt class="py-op">-</tt> <tt class="py-name">ey</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">**</tt><tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-number">0.5</tt><tt class="py-op">*</tt><tt class="py-name">gamma</tt><tt class="py-op">)</tt><tt class="py-op">**</tt><tt class="py-number">2</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L86"></a><tt class="py-lineno"> 86</tt>  <tt class="py-line"> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line"> </tt>
<a name="nc_grid"></a><div id="nc_grid-def"><a name="L88"></a><tt class="py-lineno"> 88</tt> <a class="py-toggle" href="#" id="nc_grid-toggle" onclick="return toggle('nc_grid');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#nc_grid">nc_grid</a><tt class="py-op">(</tt><tt class="py-param">nc</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_grid-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_grid-expanded"><a name="L89"></a><tt class="py-lineno"> 89</tt>  <tt class="py-line">    <tt class="py-docstring">'''</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line"><tt class="py-docstring">    Return grid class based on ROMS GRD file, or other output file with grid</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line"><tt class="py-docstring">    information.  The NetCDF file must contain either 'vert' veriables, or the</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt>  <tt class="py-line"><tt class="py-docstring">    verticies will be calculated with 'rho' and angle points.</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt>  <tt class="py-line"><tt class="py-docstring">    '''</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt>  <tt class="py-line">    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-20" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-20', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line">     </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line">    <tt class="py-name">varlist</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'h'</tt><tt class="py-op">,</tt> <tt class="py-string">'f'</tt><tt class="py-op">,</tt> <tt class="py-string">'pm'</tt><tt class="py-op">,</tt> <tt class="py-string">'pn'</tt><tt class="py-op">,</tt> <tt class="py-string">'angle'</tt><tt class="py-op">,</tt> <tt class="py-string">'theta_s'</tt><tt class="py-op">,</tt> <tt class="py-string">'theta_b'</tt><tt class="py-op">,</tt> <tt class="py-string">'hc'</tt><tt class="py-op">]</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line">    <tt class="py-name">variables</tt><tt class="py-op">=</tt><tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line">    <tt class="py-keyword">for</tt> <tt class="py-name">var</tt> <tt class="py-keyword">in</tt> <tt class="py-name">varlist</tt><tt class="py-op">:</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line">            <tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">var</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">var</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt>  <tt class="py-line">            <tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">var</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">     </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line">    <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line">        <tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'mask'</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'mask_rho'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line">    <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line">        <tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'mask'</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">None</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line">     </tt>
<a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-string">'x_vert'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-string">'y_vert'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt>  <tt class="py-line">        <tt id="link-21" class="py-name" targets="Variable octant.grid.BoundaryInteractor.x=octant.grid.BoundaryInteractor-class.html#x,Variable octant.grid.CGrid.x=octant.grid.CGrid-class.html#x"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-21', 'x', 'link-21');">x</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'x_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt>  <tt class="py-line">        <tt id="link-22" class="py-name" targets="Variable octant.grid.BoundaryInteractor.y=octant.grid.BoundaryInteractor-class.html#y,Variable octant.grid.CGrid.y=octant.grid.CGrid-class.html#y"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-22', 'y', 'link-22');">y</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'y_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt>  <tt class="py-line">         </tt>
<a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">any</tt><tt class="py-op">(</tt><tt id="link-23" class="py-name" targets="Variable octant.ocean.depths.isnan=octant.ocean.depths-module.html#isnan,Variable octant.ocean.isnan=octant.ocean-module.html#isnan,Variable octant.ocean.state.isnan=octant.ocean.state-module.html#isnan,Variable octant.ocean.step3d_t.isnan=octant.ocean.step3d_t-module.html#isnan,Variable octant.ocean.time.isnan=octant.ocean.time-module.html#isnan,Variable octant.ocean.velocity.isnan=octant.ocean.velocity-module.html#isnan"><a title="octant.ocean.depths.isnan
octant.ocean.isnan
octant.ocean.state.isnan
octant.ocean.step3d_t.isnan
octant.ocean.time.isnan
octant.ocean.velocity.isnan" class="py-name" href="#" onclick="return doclink('link-23', 'isnan', 'link-23');">isnan</a></tt><tt class="py-op">(</tt><tt id="link-24" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-24', 'x', 'link-21');">x</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-25" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-25', 'x', 'link-21');">x</a></tt> <tt class="py-op">=</tt> <tt class="py-name">ma</tt><tt class="py-op">.</tt><tt class="py-name">masked_where</tt><tt class="py-op">(</tt><tt id="link-26" class="py-name"><a title="octant.ocean.depths.isnan
octant.ocean.isnan
octant.ocean.state.isnan
octant.ocean.step3d_t.isnan
octant.ocean.time.isnan
octant.ocean.velocity.isnan" class="py-name" href="#" onclick="return doclink('link-26', 'isnan', 'link-23');">isnan</a></tt><tt class="py-op">(</tt><tt id="link-27" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-27', 'x', 'link-21');">x</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-28" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-28', 'x', 'link-21');">x</a></tt><tt class="py-op">)</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">any</tt><tt class="py-op">(</tt><tt id="link-29" class="py-name"><a title="octant.ocean.depths.isnan
octant.ocean.isnan
octant.ocean.state.isnan
octant.ocean.step3d_t.isnan
octant.ocean.time.isnan
octant.ocean.velocity.isnan" class="py-name" href="#" onclick="return doclink('link-29', 'isnan', 'link-23');">isnan</a></tt><tt class="py-op">(</tt><tt id="link-30" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-30', 'y', 'link-22');">y</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-31" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-31', 'y', 'link-22');">y</a></tt> <tt class="py-op">=</tt> <tt class="py-name">ma</tt><tt class="py-op">.</tt><tt class="py-name">masked_where</tt><tt class="py-op">(</tt><tt id="link-32" class="py-name"><a title="octant.ocean.depths.isnan
octant.ocean.isnan
octant.ocean.state.isnan
octant.ocean.step3d_t.isnan
octant.ocean.time.isnan
octant.ocean.velocity.isnan" class="py-name" href="#" onclick="return doclink('link-32', 'isnan', 'link-23');">isnan</a></tt><tt class="py-op">(</tt><tt id="link-33" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-33', 'y', 'link-22');">y</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-34" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-34', 'y', 'link-22');">y</a></tt><tt class="py-op">)</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt>  <tt class="py-line">         </tt>
<a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> <tt id="link-35" class="py-name" targets="Variable octant.grid.CGrid_geo.lon=octant.grid.CGrid_geo-class.html#lon"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-35', 'lon', 'link-35');">lon</a></tt><tt class="py-op">=</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lon_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> <tt id="link-36" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-36', 'lon', 'link-35');">lon</a></tt><tt class="py-op">=</tt><tt class="py-name">None</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt>  <tt class="py-line">         </tt>
<a name="L119"></a><tt class="py-lineno">119</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> <tt id="link-37" class="py-name" targets="Variable octant.grid.CGrid_geo.lat=octant.grid.CGrid_geo-class.html#lat"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-37', 'lat', 'link-37');">lat</a></tt><tt class="py-op">=</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lat_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> <tt id="link-38" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-38', 'lat', 'link-37');">lat</a></tt><tt class="py-op">=</tt><tt class="py-name">None</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt>  <tt class="py-line">         </tt>
<a name="L122"></a><tt class="py-lineno">122</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">Grid</tt><tt class="py-op">(</tt><tt id="link-39" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-39', 'x', 'link-21');">x</a></tt><tt class="py-op">=</tt><tt id="link-40" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-40', 'x', 'link-21');">x</a></tt><tt class="py-op">,</tt> <tt id="link-41" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-41', 'y', 'link-22');">y</a></tt><tt class="py-op">=</tt><tt id="link-42" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-42', 'y', 'link-22');">y</a></tt><tt class="py-op">,</tt> <tt id="link-43" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-43', 'lon', 'link-35');">lon</a></tt><tt class="py-op">=</tt><tt id="link-44" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-44', 'lon', 'link-35');">lon</a></tt><tt class="py-op">,</tt> <tt id="link-45" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-45', 'lat', 'link-37');">lat</a></tt><tt class="py-op">=</tt><tt id="link-46" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-46', 'lat', 'link-37');">lat</a></tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">variables</tt><tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt>  <tt class="py-line">         </tt>
<a name="L124"></a><tt class="py-lineno">124</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-string">'lon_vert'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-string">'lat_vert'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt>  <tt class="py-line">        <tt id="link-47" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-47', 'lon', 'link-35');">lon</a></tt><tt class="py-op">=</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lon_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt>  <tt class="py-line">        <tt id="link-48" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-48', 'lat', 'link-37');">lat</a></tt><tt class="py-op">=</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lat_vert'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">Grid</tt><tt class="py-op">(</tt><tt id="link-49" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-49', 'lon', 'link-35');">lon</a></tt><tt class="py-op">=</tt><tt id="link-50" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-50', 'lon', 'link-35');">lon</a></tt><tt class="py-op">,</tt> <tt id="link-51" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-51', 'lat', 'link-37');">lat</a></tt><tt class="py-op">=</tt><tt id="link-52" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-52', 'lat', 'link-37');">lat</a></tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">variables</tt><tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt>  <tt class="py-line">     </tt>
<a name="L129"></a><tt class="py-lineno">129</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt>  <tt class="py-line">            <tt class="py-name">xr</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'x_rho'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt>  <tt class="py-line">            <tt class="py-name">yr</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'y_rho'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt>  <tt class="py-line">            <tt class="py-name">pm</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'pm'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt>  <tt class="py-line">            <tt class="py-name">pn</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'pn'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">'NetCDF file must contain x_rho, y_rho, pm, and pn'</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt>  <tt class="py-line">         </tt>
<a name="L138"></a><tt class="py-lineno">138</tt>  <tt class="py-line">        <tt class="py-name">ang</tt> <tt class="py-op">=</tt> <tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'angle'</tt><tt class="py-op">]</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">ang</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt>  <tt class="py-line">            <tt class="py-name">ang</tt> <tt class="py-op">=</tt> <tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-name">xr</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'d'</tt><tt class="py-op">)</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt>  <tt class="py-line">         </tt>
<a name="L142"></a><tt class="py-lineno">142</tt>  <tt class="py-line">        <tt id="link-53" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-53', 'x', 'link-21');">x</a></tt><tt class="py-op">,</tt> <tt id="link-54" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-54', 'y', 'link-22');">y</a></tt> <tt class="py-op">=</tt> <tt id="link-55" class="py-name" targets="Function octant.grid.rho_to_vert()=octant.grid-module.html#rho_to_vert"><a title="octant.grid.rho_to_vert" class="py-name" href="#" onclick="return doclink('link-55', 'rho_to_vert', 'link-55');">rho_to_vert</a></tt><tt class="py-op">(</tt><tt class="py-name">xr</tt><tt class="py-op">,</tt> <tt class="py-name">yr</tt><tt class="py-op">,</tt> <tt class="py-name">pm</tt><tt class="py-op">,</tt> <tt class="py-name">pn</tt><tt class="py-op">,</tt> <tt class="py-name">ang</tt><tt class="py-op">)</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt>  <tt class="py-line">         </tt>
<a name="L144"></a><tt class="py-lineno">144</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-string">'x_psi'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-string">'y_psi'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt>  <tt class="py-line">            <tt class="py-name">xp</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'x_psi'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt>  <tt class="py-line">            <tt class="py-name">yp</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'y_psi'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt>  <tt class="py-line">            <tt id="link-56" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-56', 'x', 'link-21');">x</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">xp</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt>  <tt class="py-line">            <tt id="link-57" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-57', 'y', 'link-22');">y</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">yp</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt>  <tt class="py-line">         </tt>
<a name="L150"></a><tt class="py-lineno">150</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">Grid</tt><tt class="py-op">(</tt><tt id="link-58" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-58', 'x', 'link-21');">x</a></tt><tt class="py-op">=</tt><tt id="link-59" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-59', 'x', 'link-21');">x</a></tt><tt class="py-op">,</tt> <tt id="link-60" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-60', 'y', 'link-22');">y</a></tt><tt class="py-op">=</tt><tt id="link-61" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-61', 'y', 'link-22');">y</a></tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">variables</tt><tt class="py-op">)</tt> </tt>
</div><a name="L151"></a><tt class="py-lineno">151</tt>  <tt class="py-line"> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt>  <tt class="py-line"> </tt>
<a name="write_grd"></a><div id="write_grd-def"><a name="L153"></a><tt class="py-lineno">153</tt> <a class="py-toggle" href="#" id="write_grd-toggle" onclick="return toggle('write_grd');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms-module.html#write_grd">write_grd</a><tt class="py-op">(</tt><tt class="py-param">grd</tt><tt class="py-op">,</tt> <tt class="py-param">filename</tt><tt class="py-op">=</tt><tt class="py-string">'ocean_grd.nc'</tt><tt class="py-op">,</tt> <tt class="py-param">full_output</tt><tt class="py-op">=</tt><tt class="py-name">True</tt><tt class="py-op">,</tt> <tt class="py-param">verbose</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="write_grd-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="write_grd-expanded"><a name="L154"></a><tt class="py-lineno">154</tt>  <tt class="py-line">     </tt>
<a name="L155"></a><tt class="py-lineno">155</tt>  <tt class="py-line">    <tt class="py-name">Mp</tt><tt class="py-op">,</tt> <tt class="py-name">Lp</tt> <tt class="py-op">=</tt> <tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_rho</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt>  <tt class="py-line">    <tt class="py-name">M</tt><tt class="py-op">,</tt> <tt class="py-name">L</tt> <tt class="py-op">=</tt> <tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_psi</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt>  <tt class="py-line">     </tt>
<a name="L158"></a><tt class="py-lineno">158</tt>  <tt class="py-line">    <tt class="py-name">xl</tt> <tt class="py-op">=</tt> <tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_rho</tt><tt class="py-op">[</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">mask_rho</tt><tt class="py-op">==</tt><tt class="py-number">1.0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">ptp</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt>  <tt class="py-line">    <tt class="py-name">el</tt> <tt class="py-op">=</tt> <tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_rho</tt><tt class="py-op">[</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">mask_rho</tt><tt class="py-op">==</tt><tt class="py-number">1.0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">ptp</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt>  <tt class="py-line">     </tt>
<a name="L161"></a><tt class="py-lineno">161</tt>  <tt class="py-line">    <tt class="py-comment"># Write ROMS grid to file</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt class="py-name">netCDF4</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-62', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt id="link-63" class="py-name" targets="Variable octant.getm.Bdyinfo.filename=octant.getm.Bdyinfo-class.html#filename"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-63', 'filename', 'link-63');">filename</a></tt><tt class="py-op">,</tt> <tt class="py-string">'w'</tt><tt class="py-op">,</tt> <tt class="py-name">format</tt><tt class="py-op">=</tt><tt class="py-string">'NETCDF3_CLASSIC'</tt><tt class="py-op">)</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">Description</tt> <tt class="py-op">=</tt> <tt class="py-string">'ROMS grid'</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">Author</tt> <tt class="py-op">=</tt> <tt class="py-string">'pyroms.gridgen'</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">Created</tt> <tt class="py-op">=</tt> <tt class="py-name">datetime</tt><tt class="py-op">.</tt><tt class="py-name">now</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">isoformat</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> <tt class="py-op">=</tt> <tt class="py-string">'ROMS GRD file'</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt>  <tt class="py-line">     </tt>
<a name="L168"></a><tt class="py-lineno">168</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'xi_rho'</tt><tt class="py-op">,</tt> <tt class="py-name">Lp</tt><tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'xi_u'</tt><tt class="py-op">,</tt> <tt class="py-name">L</tt><tt class="py-op">)</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'xi_v'</tt><tt class="py-op">,</tt> <tt class="py-name">Lp</tt><tt class="py-op">)</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'xi_psi'</tt><tt class="py-op">,</tt> <tt class="py-name">L</tt><tt class="py-op">)</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt>  <tt class="py-line">     </tt>
<a name="L173"></a><tt class="py-lineno">173</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-name">Mp</tt><tt class="py-op">)</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-name">Mp</tt><tt class="py-op">)</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-name">M</tt><tt class="py-op">)</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-name">M</tt><tt class="py-op">)</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt>  <tt class="py-line">     </tt>
<a name="L178"></a><tt class="py-lineno">178</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'xi_vert'</tt><tt class="py-op">,</tt> <tt class="py-name">Lp</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-string">'eta_vert'</tt><tt class="py-op">,</tt> <tt class="py-name">Mp</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt>  <tt class="py-line">     </tt>
<a name="L181"></a><tt class="py-lineno">181</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-string">'xl'</tt><tt class="py-op">,</tt> <tt class="py-string">'f8'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'xl'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> <tt class="py-op">=</tt> <tt class="py-string">'meters'</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'xl'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">xl</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt>  <tt class="py-line">     </tt>
<a name="L185"></a><tt class="py-lineno">185</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-string">'el'</tt><tt class="py-op">,</tt> <tt class="py-string">'f8'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'el'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> <tt class="py-op">=</tt> <tt class="py-string">'meters'</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'el'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">el</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt>  <tt class="py-line">     </tt>
<a name="L189"></a><tt class="py-lineno">189</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-string">'spherical'</tt><tt class="py-op">,</tt> <tt class="py-string">'S1'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'spherical'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'F'</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt>  <tt class="py-line">     </tt>
<a name="L192"></a><tt class="py-lineno">192</tt>  <tt class="py-line">    <tt class="py-keyword">def</tt> <tt class="py-def-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-param">var</tt><tt class="py-op">,</tt> <tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">dimensions</tt><tt class="py-op">,</tt> <tt class="py-param">units</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt>  <tt class="py-line">        <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-string">'f8'</tt><tt class="py-op">,</tt> <tt class="py-name">dimensions</tt><tt class="py-op">)</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">units</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt>  <tt class="py-line">            <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> <tt class="py-op">=</tt> <tt class="py-name">units</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt>  <tt class="py-line">        <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">var</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt><tt class="py-op">:</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">' ... wrote '</tt><tt class="py-op">,</tt> <tt class="py-name">name</tt> </tt>
</div><a name="L199"></a><tt class="py-lineno">199</tt>  <tt class="py-line">     </tt>
<a name="L200"></a><tt class="py-lineno">200</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-number">1.0</tt><tt class="py-op">/</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">dx</tt><tt class="py-op">,</tt> <tt class="py-string">'pm'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters-1'</tt><tt class="py-op">)</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-number">1.0</tt><tt class="py-op">/</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">dy</tt><tt class="py-op">,</tt> <tt class="py-string">'pn'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters-1'</tt><tt class="py-op">)</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">dmde</tt><tt class="py-op">,</tt> <tt class="py-string">'dmde'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">dndx</tt><tt class="py-op">,</tt> <tt class="py-string">'dndx'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">angle_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'angle'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt>  <tt class="py-line">     </tt>
<a name="L206"></a><tt class="py-lineno">206</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">f</tt><tt class="py-op">,</tt> <tt class="py-string">'f'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'seconds-1'</tt><tt class="py-op">)</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">h</tt><tt class="py-op">,</tt> <tt class="py-string">'h'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt>  <tt class="py-line">     </tt>
<a name="L209"></a><tt class="py-lineno">209</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">mask_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'mask_rho'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name" targets="Variable octant.grid.CGrid.mask_u=octant.grid.CGrid-class.html#mask_u"><a title="octant.grid.CGrid.mask_u" class="py-name" href="#" onclick="return doclink('link-64', 'mask_u', 'link-64');">mask_u</a></tt><tt class="py-op">,</tt> <tt class="py-string">'mask_u'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_u'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name" targets="Variable octant.grid.CGrid.mask_v=octant.grid.CGrid-class.html#mask_v"><a title="octant.grid.CGrid.mask_v" class="py-name" href="#" onclick="return doclink('link-65', 'mask_v', 'link-65');">mask_v</a></tt><tt class="py-op">,</tt> <tt class="py-string">'mask_v'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_v'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt>  <tt class="py-line">    <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name" targets="Variable octant.grid.CGrid.mask_psi=octant.grid.CGrid-class.html#mask_psi"><a title="octant.grid.CGrid.mask_psi" class="py-name" href="#" onclick="return doclink('link-66', 'mask_psi', 'link-66');">mask_psi</a></tt><tt class="py-op">,</tt> <tt class="py-string">'mask_psi'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_psi'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt>  <tt class="py-line">     </tt>
<a name="L214"></a><tt class="py-lineno">214</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">full_output</tt><tt class="py-op">:</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_vert</tt><tt class="py-op">,</tt> <tt class="py-string">'x_vert'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_vert'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_vert'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_vert</tt><tt class="py-op">,</tt> <tt class="py-string">'y_vert'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_vert'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_vert'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'x_rho'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'y_rho'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_u</tt><tt class="py-op">,</tt> <tt class="py-string">'x_u'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_u'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_u</tt><tt class="py-op">,</tt> <tt class="py-string">'y_u'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_u'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_v</tt><tt class="py-op">,</tt> <tt class="py-string">'x_v'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_v'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_v</tt><tt class="py-op">,</tt> <tt class="py-string">'y_v'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_v'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">x_psi</tt><tt class="py-op">,</tt> <tt class="py-string">'x_psi'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_psi'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt>  <tt class="py-line">        <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">y_psi</tt><tt class="py-op">,</tt> <tt class="py-string">'y_psi'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_psi'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">proj</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lon_vert</tt><tt class="py-op">,</tt> <tt class="py-string">'lon_vert'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_vert'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_vert'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lat_vert</tt><tt class="py-op">,</tt> <tt class="py-string">'lat_vert'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_vert'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_vert'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lon_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'lon_rho'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lat_rho</tt><tt class="py-op">,</tt> <tt class="py-string">'lat_rho'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_rho'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_rho'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lon_u</tt><tt class="py-op">,</tt> <tt class="py-string">'lon_u'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_u'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lat_u</tt><tt class="py-op">,</tt> <tt class="py-string">'lat_u'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_u'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_u'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lon_v</tt><tt class="py-op">,</tt> <tt class="py-string">'lon_v'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_v'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lat_v</tt><tt class="py-op">,</tt> <tt class="py-string">'lat_v'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_v'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_v'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lon_psi</tt><tt class="py-op">,</tt> <tt class="py-string">'lon_psi'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_psi'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt>  <tt class="py-line">            <tt class="py-name">write_nc_var</tt><tt class="py-op">(</tt><tt class="py-name">grd</tt><tt class="py-op">.</tt><tt class="py-name">lat_psi</tt><tt class="py-op">,</tt> <tt class="py-string">'lat_psi'</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'eta_psi'</tt><tt class="py-op">,</tt> <tt class="py-string">'xi_psi'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'meters'</tt><tt class="py-op">)</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt>  <tt class="py-line">     </tt>
<a name="L237"></a><tt class="py-lineno">237</tt>  <tt class="py-line">    <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name" targets="Method octant.extern.pupynere.NetCDFFile.close()=octant.extern.pupynere.NetCDFFile-class.html#close,Method octant.getm.Bdy2d.close()=octant.getm.Bdy2d-class.html#close,Method octant.getm.Bdy3d.close()=octant.getm.Bdy3d-class.html#close"><a title="octant.extern.pupynere.NetCDFFile.close
octant.getm.Bdy2d.close
octant.getm.Bdy3d.close" class="py-name" href="#" onclick="return doclink('link-67', 'close', 'link-67');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L238"></a><tt class="py-lineno">238</tt>  <tt class="py-line"> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt>  <tt class="py-line"> </tt>
<a name="nc_depths"></a><div id="nc_depths-def"><a name="L240"></a><tt class="py-lineno">240</tt> <a class="py-toggle" href="#" id="nc_depths-toggle" onclick="return toggle('nc_depths');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.roms.nc_depths-class.html">nc_depths</a><tt class="py-op">(</tt><tt class="py-base-class">s_coordinate</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_depths-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="nc_depths-expanded"><a name="nc_depths.__init__"></a><div id="nc_depths.__init__-def"><a name="L241"></a><tt class="py-lineno">241</tt> <a class="py-toggle" href="#" id="nc_depths.__init__-toggle" onclick="return toggle('nc_depths.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.roms.nc_depths-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nc</tt><tt class="py-op">,</tt> <tt class="py-param">grid</tt><tt class="py-op">=</tt><tt class="py-string">'rho'</tt><tt class="py-op">,</tt> <tt class="py-param">h</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="nc_depths.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="nc_depths.__init__-expanded"><a name="L242"></a><tt class="py-lineno">242</tt>  <tt class="py-line">        <tt class="py-docstring">"""docstring for __init__"""</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt id="link-68" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-68', 'Dataset', 'link-2');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">)</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt>  <tt class="py-line">        <tt class="py-name">hc</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'hc'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">h</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'h'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt>  <tt class="py-line">        <tt class="py-name">theta_b</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'theta_b'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt>  <tt class="py-line">        <tt class="py-name">theta_s</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'theta_s'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt>  <tt class="py-line">            <tt class="py-name">N</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-string">'N'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt>  <tt class="py-line">            <tt class="py-name">N</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-string">'s_rho'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt>  <tt class="py-line">        <tt class="py-name">zeta</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'zeta'</tt><tt class="py-op">]</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt>  <tt class="py-line">        <tt class="py-name">super</tt><tt class="py-op">(</tt><tt id="link-69" class="py-name"><a title="octant.roms.nc_depths" class="py-name" href="#" onclick="return doclink('link-69', 'nc_depths', 'link-8');">nc_depths</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Method octant.depths.s_coordinate.__init__()=octant.depths.s_coordinate-class.html#__init__,Method octant.extern.greatcircle.GreatCircle.__init__()=octant.extern.greatcircle.GreatCircle-class.html#__init__,Method octant.extern.kdtree.KDTree.__init__()=octant.extern.kdtree.KDTree-class.html#__init__,Method octant.extern.kdtree.KDTree.innernode.__init__()=octant.extern.kdtree.KDTree.innernode-class.html#__init__,Method octant.extern.kdtree.KDTree.leafnode.__init__()=octant.extern.kdtree.KDTree.leafnode-class.html#__init__,Method octant.extern.kdtree.Rectangle.__init__()=octant.extern.kdtree.Rectangle-class.html#__init__,Method octant.extern.pupynere.NetCDFFile.__init__()=octant.extern.pupynere.NetCDFFile-class.html#__init__,Method octant.extern.pupynere.NetCDFVariable.__init__()=octant.extern.pupynere.NetCDFVariable-class.html#__init__,Method octant.getm.Bdy2d.__init__()=octant.getm.Bdy2d-class.html#__init__,Method octant.getm.Bdy3d.__init__()=octant.getm.Bdy3d-class.html#__init__,Method octant.getm.Bdyinfo.__init__()=octant.getm.Bdyinfo-class.html#__init__,Method octant.getm.Transect.__init__()=octant.getm.Transect-class.html#__init__,Method octant.grid.BoundaryInteractor.__init__()=octant.grid.BoundaryInteractor-class.html#__init__,Method octant.grid.CGrid.__init__()=octant.grid.CGrid-class.html#__init__,Method octant.grid.CGrid_geo.__init__()=octant.grid.CGrid_geo-class.html#__init__,Method octant.grid.Focus.__init__()=octant.grid.Focus-class.html#__init__,Method octant.grid.Gridgen.__init__()=octant.grid.Gridgen-class.html#__init__,Method octant.grid.edit_mask_mesh.__init__()=octant.grid.edit_mask_mesh-class.html#__init__,Method octant.ocean.depths.Depths.__init__()=octant.ocean.depths.Depths-class.html#__init__,Method octant.ocean.step3d_t.Step3d_t.__init__()=octant.ocean.step3d_t.Step3d_t-class.html#__init__,Method octant.ocean.velocity.nc_velocity.__init__()=octant.ocean.velocity.nc_velocity-class.html#__init__,Method octant.roms.nc_N2.__init__()=octant.roms.nc_N2-class.html#__init__,Method octant.roms.nc_depths.__init__()=octant.roms.nc_depths-class.html#__init__,Method octant.tools.Transect_extrapolator.__init__()=octant.tools.Transect_extrapolator-class.html#__init__"><a title="octant.depths.s_coordinate.__init__
octant.extern.greatcircle.GreatCircle.__init__
octant.extern.kdtree.KDTree.__init__
octant.extern.kdtree.KDTree.innernode.__init__
octant.extern.kdtree.KDTree.leafnode.__init__
octant.extern.kdtree.Rectangle.__init__
octant.extern.pupynere.NetCDFFile.__init__
octant.extern.pupynere.NetCDFVariable.__init__
octant.getm.Bdy2d.__init__
octant.getm.Bdy3d.__init__
octant.getm.Bdyinfo.__init__
octant.getm.Transect.__init__
octant.grid.BoundaryInteractor.__init__
octant.grid.CGrid.__init__
octant.grid.CGrid_geo.__init__
octant.grid.Focus.__init__
octant.grid.Gridgen.__init__
octant.grid.edit_mask_mesh.__init__
octant.ocean.depths.Depths.__init__
octant.ocean.step3d_t.Step3d_t.__init__
octant.ocean.velocity.nc_velocity.__init__
octant.roms.nc_N2.__init__
octant.roms.nc_depths.__init__
octant.tools.Transect_extrapolator.__init__" class="py-name" href="#" onclick="return doclink('link-70', '__init__', 'link-70');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">h</tt><tt class="py-op">,</tt> <tt class="py-name">hc</tt><tt class="py-op">,</tt> <tt class="py-name">theta_b</tt><tt class="py-op">,</tt> <tt class="py-name">theta_s</tt><tt class="py-op">,</tt> <tt class="py-name">N</tt><tt class="py-op">,</tt> \ </tt>
<a name="L255"></a><tt class="py-lineno">255</tt>  <tt class="py-line">                                           <tt id="link-71" class="py-name"><a title="octant.grid" class="py-name" href="#" onclick="return doclink('link-71', 'grid', 'link-9');">grid</a></tt><tt class="py-op">=</tt><tt id="link-72" class="py-name"><a title="octant.grid" class="py-name" href="#" onclick="return doclink('link-72', 'grid', 'link-9');">grid</a></tt><tt class="py-op">,</tt> <tt class="py-name">zeta</tt><tt class="py-op">=</tt><tt class="py-name">zeta</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L256"></a><tt class="py-lineno">256</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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